FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane3_Index14_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 23416127 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 4938435 | 2.599347 | 5.2913527 | 1 |
| CCTGG | 4919070 | 2.5790842 | 6.176937 | 1 |
| GAAGA | 4966150 | 2.5560188 | 5.1172247 | 2 |
| CTTCT | 5111655 | 2.5166392 | 5.533671 | 1 |
| CTGGA | 4720280 | 2.447287 | 8.800568 | 1 |
| TCCAG | 4631195 | 2.3621447 | 5.7383294 | 2 |
| CTGCT | 4604300 | 2.3392928 | 5.064717 | 1 |
| CTCCT | 4625005 | 2.3116891 | 7.486614 | 1 |
| CTGGG | 4305515 | 2.2946231 | 8.486437 | 1 |
| CAGGA | 4300850 | 2.238535 | 5.645472 | 1 |
| CCCAG | 4236480 | 2.1936955 | 7.264009 | 1 |
| CTTCA | 4434545 | 2.1918 | 5.6907043 | 1 |
| CTCCA | 4348880 | 2.1821625 | 8.137454 | 1 |
| CAGAA | 4154290 | 2.1034749 | 5.1912284 | 1 |
| CTCTG | 4026205 | 2.0455818 | 6.308878 | 1 |
| CTGCA | 3923175 | 2.0010183 | 5.0068264 | 1 |
| CTGGC | 3585130 | 1.8796952 | 5.3862414 | 1 |
| TGGAA | 3625900 | 1.8589495 | 5.2503757 | 2 |
| CTGAA | 3665420 | 1.8487228 | 5.444396 | 1 |
| CTCAG | 3435865 | 1.7524656 | 6.140882 | 1 |
| CTGGT | 3217510 | 1.6616695 | 5.134247 | 1 |
| CTTGG | 3160070 | 1.6320047 | 5.3284025 | 1 |